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Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Keyword
Chromosome
1
2
3
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5
6
7
8
9
10
11
12
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14
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18
MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
Kidney
Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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406 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
AACS
ENSSSCG00000009755
ENSG00000081760
Acetoacetyl-CoA synthetase
Tissue enhanced
Detected in all
adipose tissue:
40.7
ABCD1
ENSSSCG00000012779
ENSG00000101986
ATP binding cassette subfamily D member 1
Low tissue specificity
Detected in all
ABHD14B
ENSSSCG00000040890
ENSG00000114779
Abhydrolase domain containing 14B
Low tissue specificity
Detected in all
ACACB
ENSSSCG00000009937
ENSG00000076555
Acetyl-CoA carboxylase 2 precursor
Tissue enhanced
Detected in many
heart:
31.7
male glands:
64.1
salivary gland:
45.8
skeletal muscle:
31.3
ACBD3
ENSSSCG00000024180
ENSG00000182827
Golgi resident protein GCP60
Low tissue specificity
Detected in all
ACCS
ENSSSCG00000013282
ENSG00000110455
1-aminocyclopropane-1-carboxylate synthase homolog (inactive)
Low tissue specificity
Detected in all
ACSF2
ENSSSCG00000017566
ENSG00000167107
Acyl-CoA synthetase family member 2
Tissue enhanced
Detected in all
testis:
110.3
ACSS2
ENSSSCG00000007286
ENSG00000131069
Acetyl-coenzyme A synthetase, cytoplasmic
Low tissue specificity
Detected in all
ADCY6
ENSSSCG00000000175
ENSG00000174233
Adenylate cyclase 6
Tissue enhanced
Detected in all
heart:
76.9
ADPRH
ENSSSCG00000011896
ENSG00000144843
ADP-ribosylarginine hydrolase
Low tissue specificity
Detected in all
ADSL
ENSSSCG00000000077
ENSG00000239900
Adenylosuccinate lyase
Tissue enhanced
Detected in all
skeletal muscle:
56.8
AEN
ENSSSCG00000005102
ENSG00000181026
Apoptosis enhancing nuclease
Low tissue specificity
Detected in all
AFDN
ENSSSCG00000004018
ENSG00000130396
Afadin, adherens junction formation factor
Low tissue specificity
Detected in all
AFF1
ENSSSCG00000023593
ENSG00000172493
AF4/FMR2 family member 1
Low tissue specificity
Detected in all
AGPAT2
ENSSSCG00000040845
ENSG00000169692
1-acyl-sn-glycerol-3-phosphate acyltransferase beta precursor
Low tissue specificity
Detected in many
AKT2
ENSSSCG00000002989
ENSG00000105221
RAC-beta serine/threonine-protein kinase
Tissue enhanced
Detected in all
adipose tissue:
96.5
ALDH3B1
ENSSSCG00000028501
ENSG00000006534
Aldehyde dehydrogenase family 3 member B1
Tissue enhanced
Detected in many
lung:
26.5
ALPK3
ENSSSCG00000034070
ENSG00000136383
Alpha kinase 3
Tissue enhanced
Detected in all
skeletal muscle:
95.8
ALS2CL
ENSSSCG00000021997
ENSG00000178038
ALS2 C-terminal like
Low tissue specificity
Detected in many
ANKS6
ENSSSCG00000005378
ENSG00000165138
Ankyrin repeat and sterile alpha motif domain containing 6
Low tissue specificity
Detected in many
ANO1
ENSSSCG00000024158
ENSG00000131620
Anoctamin 1
Tissue enhanced
Detected in many
liver:
46.1
male glands:
42.1
ANXA4
ENSSSCG00000008336
ENSG00000196975
Annexin A4
Tissue enriched
Detected in many
gallbladder:
149.4
AR
ENSSSCG00000012371
ENSG00000169083
Androgen receptor
Tissue enhanced
Detected in many
cervix:
42.8
ARAF
ENSSSCG00000012275
ENSG00000078061
Serine/threonine-protein kinase A-Raf
Low tissue specificity
Detected in all
ARFGAP2
ENSSSCG00000013245
ENSG00000149182
ADP-ribosylation factor GTPase-activating protein 2
Low tissue specificity
Detected in all
ARHGAP18
ENSSSCG00000004205
ENSG00000146376
Rho GTPase activating protein 18
Tissue enhanced
Detected in all
mesothelial tissue:
56.1
ARNT
ENSSSCG00000006646
ENSG00000143437
Aryl hydrocarbon receptor nuclear translocator
Tissue enhanced
Detected in all
dura mater:
99.1
ATF5
ENSSSCG00000003201
ENSG00000169136
Activating transcription factor 5
Tissue enhanced
Detected in all
lens:
54.3
liver:
130.9
salivary gland:
58.8
ATL3
ENSSSCG00000013054
ENSG00000184743
Atlastin GTPase 3
Low tissue specificity
Detected in all
B4GALT1
ENSSSCG00000035454
ENSG00000086062
Beta-1,4-galactosyltransferase 1
Low tissue specificity
Detected in all
BCAR1
ENSSSCG00000028878
ENSG00000050820
BCAR1, Cas family scaffolding protein
Tissue enhanced
Detected in all
kidney:
80.1
BCAT2
ENSSSCG00000003139
ENSG00000105552
Branched chain amino acid transaminase 2
Tissue enhanced
Detected in all
adrenal gland:
92.0
BCL9L
ENSSSCG00000015099
ENSG00000186174
B cell CLL/lymphoma 9 like
Low tissue specificity
Detected in all
BTBD7
ENSSSCG00000002461
ENSG00000011114
BTB domain containing 7
Low tissue specificity
Detected in all
CALML4
ENSSSCG00000026517
ENSG00000129007
Calmodulin-like 4
Tissue enhanced
Detected in many
choroid plexus:
49.8
CAPG
ENSSSCG00000008239
ENSG00000042493
Capping actin protein, gelsolin like
Tissue enhanced
Detected in all
cornea:
75.4
lens:
57.7
CCDC102A
ENSSSCG00000028723
ENSG00000135736
Coiled-coil domain containing 102A
Low tissue specificity
Detected in many
CCND1
ENSSSCG00000037900
ENSG00000110092
Cyclin D1
Low tissue specificity
Detected in many
CCR10
ENSSSCG00000017392
ENSG00000184451
C-C chemokine receptor type 10
Low tissue specificity
Detected in all
CDA
ENSSSCG00000021259
ENSG00000158825
Cytidine deaminase
Tissue enhanced
Detected in many
cartilage:
51.0
male glands:
51.9
CDC42EP5
ENSSSCG00000039922
ENSG00000167617
CDC42 effector protein 5
Tissue enhanced
Detected in many
male glands:
165.6
CDCP2
ENSSSCG00000030538
ENSG00000157211
CUB domain containing protein 2
Low tissue specificity
Detected in many
CECR2
ENSSSCG00000000766
ENSG00000099954
CECR2, histone acetyl-lysine reader
Low tissue specificity
Detected in all
CEL
ENSSSCG00000028671
ENSG00000170835
Carboxyl ester lipase
Tissue enhanced
Detected in many
male glands:
9.0
CGNL1
ENSSSCG00000035038
ENSG00000128849
Cingulin like 1
Tissue enhanced
Detected in many
kidney:
62.8
thyroid gland:
72.5
CKAP4
ENSSSCG00000000171
ENSG00000136026
Cytoskeleton-associated protein 4
Tissue enhanced
Detected in all
cartilage:
61.8
ovary:
56.8
CLCF1
ENSSSCG00000012915
ENSG00000175505
Cardiotrophin like cytokine factor 1
Low tissue specificity
Detected in all
CLIC5
ENSSSCG00000037416
ENSG00000112782
Chloride intracellular channel 5
Tissue enriched
Detected in many
lens:
235.3
CMTM8
ENSSSCG00000022618
ENSG00000170293
CKLF like MARVEL transmembrane domain containing 8
Tissue enhanced
Detected in many
male glands:
57.0
COBLL1
ENSSSCG00000025598
ENSG00000082438
Cordon-bleu WH2 repeat protein like 1
Tissue enhanced
Detected in many
adrenal gland:
67.3
kidney:
81.8
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